PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g074970.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 269aa    MW: 29120.3 Da    PI: 6.0268
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g074970.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002187109123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  Csa05g074970.1  87 FSCNYCQRKFYSSQALGGHQNAH 109
                     89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-683114No hitNo description
PROSITE profilePS5015711.42787114IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MRPILDLEIE ASSDSSSSQV ASNLSPVGED YNKPISLNLS LSFNNNNKNN NLDLESSSLT  60
LPLSSTSESS NPEQQQQQQP SVSKRVFSCN YCQRKFYSSQ ALGGHQNAHK RERTLAKRAM  120
RMGLAGVFPG RGSSSNYAAA ATAAALSCLP LHGSGNANMT SFRTLGIRAH ASSHDVGGIT  180
RQTPETIIRN IARFNQGYFG NCIPFYVEDD EAEMLWPGSF RQGTDAVAAE VVAEAGNDNL  240
SERKMDFLDV KQAMDMESTS LPDLTLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511539.10.0PREDICTED: zinc finger protein 4
SwissprotQ392631e-138ZFP4_ARATH; Zinc finger protein 4
TrEMBLR0IFQ51e-144R0IFQ5_9BRAS; Uncharacterized protein
STRINGAT1G66140.11e-136(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66722643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.11e-116zinc finger protein 4